CARACTERISATION PHENOTYPIQUE ET GENETIQUE DU RIZ AFRICAIN (ORYZA GLABERRIMA STEUD) PHENOTYPIC AND GENETIC CHARACTERIZATION OF AFRICAN RICE (ORYZA GLABERRIMA STEUD).

  • Laboratoire de Biologie Mol?culaire et de Formulation Alimentaire; Ecole de Nutrition, Sciences et Technologies Alimentaires, Facult? des Sciences Agronomiques, Universit? Abomey Calavi Benin.
  • Laboratoire des Sciences des Aliments ; Ecole de Nutrition, Sciences et Technologies Alimentaires, Facult? des Sciences Agronomiques, Universit? Abomey Calavi Benin.
  • Unit? Mixte de Recherche Diversit? et Adaptation des Esp?ces, Institut de Recherche pour le D?veloppement, Montpellier, France.
  • Laboratoire Mixte International Adaptation des Plantes et Microorganismes Associ?s aux Stress Environnementaux, Centre de Recherche de Bel AirDakar, S?n?gal.
  • Laboratoire National de Recherches sur les Productions V?g?tales, Institut S?n?galais de Recherches Agricoles, Centre de Recherche de Bel AirDakar, S?n?gal.
  • UFR des Sciences Agronomiques, d?Aquaculture et de Technologies Alimentaires (S2ATA), Universit? Gaston BERGER, Saint-Louis, S?n?gal.
  • Centre du riz pour l?Afrique (AfricaRice), Abomey-Calavi, B?nin.
  • Centre du riz pour l?Afrique (AfricaRice), Sahel, Saint-Louis, S?n?gal.
  • Centre du riz pour l?Afrique (AfricaRice), Antananarivo, Madagascar.
  • Unit? de Recherche en G?nie Enzymatique et Alimentaire (URGEA), Laboratoire d?Etude et de Recherche en Chimie Appliqu?e (LERCA), D?partement de G?nie de Technologie Alimentaire, Ecole Polytechnique d?Abomey-Calavi, Universit? d?Abomey- Calavi B?nin.
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The agronomic interest of African rice and the morphological similarities with other species, arouse the necessity to characterize African rice for recovery and conservation. The present study aims primarily to characterize phenotypically and genetically African rice for better exploitation in aid of rice producers and consumers. Indeed, the phenotypic characteristics of the rice accessions examined have been determined in two agronomics systems (upland and irrigated) carried out about 235 accessions of African rice; and afterwards, genetic characterization using a specific marker has been carried. At the end of the analyzes, with regard to the phenotypic characters, 22 O.sativa or interspecific accessions differing morphologically on several descriptors were identified. Genetically, out of 19 profiles revealed on a 935-bp band, 14 confirmed the phenotypic results. This study shows that 221 out of 235 accessions are O. glaberrima rice. These results show that the accessions of different species analyzed were confused during the collection. They also seems to validate the possibility of hybridization between the two rice species in peasant environment. The accessions characterized strengthen the conservation effort of African rice. This collection can be used for future studies, particularly with perspective to selection and running African rice with the possibility to establish a genetic model to facilitate the transfer of useful genes from O.glaberrima to O.sativa, while controlling the reproductive barrier. Thus, it will be easy to better exploit the genetic diversity of the African species of cultivated rice.

  1. (2010)?: New Breeding Directions at AfricaRice: Beyond NERICA. Cotonou, Benin: .24p. ISBN?: 978-92-9113-340-6 (print)
  2. Angeles-Shim, R. B., Asano, K., Takashi, T., Kitano, H., Ashikari, M. (2009): Mapping of the glabrous gene in rice using CSSLs derived from the cross Oryza sativa japonicacv. Koshihikari and O.glaberrima. Paper presented at the 6th International Rice Genetics Symposium, Manila, Philippines, 16?19 November.
  3. (2002)?: M?mento de l?agronome, Minist?re des affaires ?trang?res - CIRAD -GRET; 799 - 811 (1687 p).
  4. Carney, J. (2001): African rice in the columbian exchange. The Journal of African History., (42): 377-396.
  5. Dally, A. M. and Second, G. (1990): Chloroplast DNA diversity in wild and cultivated species of rice (Genus Oryza, Section Oryza). Caldistic-mutation and genetic-distance analysis. Theor Appl Genet., 80?: 209-222.
  6. Doyle, J. J and Doyle, J. L. (1987): A rapid isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bul., 19: 11-15.
  7. Garavito, A., Guyot, R., Lozano, J., Gavory, F., Samain, S., Panaud, O., Tohme, J., Ghesqui?re, A., Lorieux, M. (2010): A genetic model for the female sterility barrier between Asian and African cultivated rice species. ,185(4)?: 1425?1440.
  8. Gridley, H., Jones, M., Wopereis-Pura, M. (2002)?: Development of New Rice for Africa (Nerica) and participatory varietal selection. In Witcombe, J., Parr, L. and Atlin, G. (eds.) Breeding rainfed rice for drought-prone environments: integrating conventional and participatory plant breeding in South and Southeast Asia. Gwynedd, Centre for Arid Zone Studies, University of Wales, pp.23-28.
  9. Guyot, R., Garavito, A., Gavory, F., Samain, S., Tohme, J., Ghesqui?re, A., Lorieux, M. (2011): Patterns of sequence divergence and evolution of the s-1 orthologous regions between Asian and African cultivated rice species. Plos One., 6(3)?: p. 17726. doi: 10.1371/journal.pone.0017726.
  10. Hien, N. L., Sarhadi, W. A., Oikawa, Y., Hirata, Y. (2007)?: Genetic diversity of morphological responses and the relationships among Asia aromatic rice ( Sativa L.) cultivars. Topics., 16(4)?: 13 p.
  11. Hiroaki, S. and Takeshi, I. (2010): Massive gene losses in Asian cultivated rice unveiled by comparative genome analysis. BMC Genomics., 11:121 http://www.biomedcentral.com/ 1471-2164/11/121, doi:10.1186/1471-2164-11-121
  12. Huang, X., Kurata, N., Wei, X., Wang, Z. X., Wang, A., Zhao, Q., and al. (2012)?: A map of rice genome variation reveals the origin of cultivated rice. ,490?: 497?501.doi:10.1038/nature11532
  13. Koide, Y., Ikenaga, M., Shinya, Y., Matsubara, K., Sano, Y. (2008)?: Two loosely linked genes controlling the female specificity for cross-incompatibility in rice. ,164(3)?: 753?760.
  14. Li, Z. M., Zheng, X. M. and Ge, S. (2011)?: ?Genetic diversity and domestication history of African rice (Oryza glaberrima) as inferred from multiple gene sequences?. Theor. Appl. Genet., 123?: pp. 21-31.
  15. Mendez Del Villar, P., and Bauer, J. M. (2013)?: Le riz en Afrique de l\\\'Ouest: dynamiques, politiques et perspectives. Cah Agric., (22)?: 336-44 doi : 10.1684/a9r.2013.0657.
  16. Montcho,, Gb?nou, P., Missihoun, A. A., Futakuchi, K., Ahanhanzo, C., Agbangla, C. (2017)?: Comparative study of two rice cultivars (Oryza glaberrima and Oryza sativa) under different cultural conditions, Journal of Experimental Biology and Agricultural Sciences., 5(1): 2320 ? 8694, http://www.jebas.org. ISSN No.
  17. Moukoumbi, Y. D., Sie, M., Vodouhe, R., Ogunbayo, S. A., N?dri, B., Toulou, B., Ahanchede, A. (2011): Assessing phenotypic diversity of interspecific rice varieties using agro-morphological characterization. J. Plant Breed. Crop Sci., 3: 74-86.
  18. Murray, S. S. (2004)?: Searching for the origins of African rice domestication. Antiquity 78p
  19. Nabholz, B., Gautier, S., Sabot, F., Ruiz, M., Adam, H., Nidelet, S., Ghesqui?re, A., Santoni, S., David, J. and Gl?min, S. (2014)?: Transcriptome population genomics reveals severe bottleneck and domestication cost in the African rice (Oryza glaberrima). Molecular Ecology., 23?: 2210-2227.
  20. Naoki, H., Naomi, M., Takayuki, K., Kazuhiro, U. and Ken I. (2010)?: MPertohotdoolocgoy l: a simple gel-free method for SNP genotyping using allele-specific primers in rice and other plant species. Plant Methods., 6:12. http://www.plantmethods.com/content/6/1/12
  21. Nayar, N. M. (2012): Evolution of the African Rice : A Historical and Biological Perspective. Crop Science Society of America., Vol 52, 505 - 516.
  22. Nokoe, S. (2001): Augmented block Design (ABD): the choice design for large scale farmer participatory on-farm trials, 5 p. (http : // www. Unu.edu/enu/plec).
  23. Nwilene, F. E., Williams, U. T., Ukwangwu, M. N., Dakouo, D., Nacro, S., Hmadoun, A. and Kamara, S. I. (2002)?: Reactions of differential genotypes to African gall midge in West Africa. Pest Manag.,48?: 195?201.
  24. Ojo, D. K., Ogunbayo, S. A., Sanni, A. K., Guei, R. G. (2009)?: The determination of diversity and relationships among forty rice (Oryza sativa L.) accessions by comparative analysis of morphological and RAPD data 12p.
  25. Orjuela, J., Sabot, F., Cheron, S., Vigouroux, Y., Adam, H., Chrestin, H.,Sanni, K., Lorieux, M. and Ghesquiere, A. (2014): An extensive analysis of the African rice genetic diversity through a global genotyping. Theor. Appl. Genet., 127(10): 2211 -2223.
  26. Paterson, A. H., Bowers, J. E., Bruggmann, R. and al. (2009): The Sorghum bicolor genome and the diversification of grasses. Nature., 457?: 551?556.
  27. Sano, Y. (1986): Sterility barriers between Oryza sativa and glaberrima. In: Rice Genetics. Proceedings of the International Rice Genetics Symposium, 27?31 May 1985. International Rice Research Institute, Manila, Philippines, pp. 109?118.
  28. Sano, Y. (1990): The genic nature of gamete eliminator in rice. Genetics., 125: 183?191.
  29. Sharma, J. R. (1988): Statistical and biometrical techniques in plant Breeding. New Age International Publishers. Edition 1988, Reprint 2006. 365p.
  30. Tanksley, S. D., McCouch, S. R. (1997): Seed banks and molecular maps: Unlocking genetic potential from the wild. Science., 277: 1063-1066.
  31. Vaughan, D. A., Lu, B. R. and Tomooka, N. (2008)?: The evolving story of rice evolution. Plant Sci., 174?: 394?408.
  32. Vaughan, D. A., Morishima, H. and Kadowaki, K. (2003)?: Diversity in the Oryza Current Opinion in Plant Molecular Biology., 6?: 139-146.
  33. Vido, A. A. (2011): Le riz africain (Oryza glaberrima Steudel), un aspect de l?histoire rurale de la C?te de l?Or ou l?extension de la zone de ? civilisation du riz ? (XVII?-XVIII? Si?cles). Revue Ivoirienne d?histoire, N? 19, 41 - 60.
  34. Xianneng, D., Jiawu, Z., Peng, X., Jing, L., Fengyi, H. and Dayun, T. (2010): The role of S1-g allele from Oryza glaberrima in improving interspecific hybrid sterility between sativa and O. glaberrima. Breeding Science 60: 342?346 doi:10.1270/jsbbs.60.342.

[Claude Gnacadja, Cecile Berthouly-Salazar, Saidou Nourou Sall, Leila Zekraoui, Francois Sabot, Esther Pegalepo, Baboucarr Manneh, Generose Vieira-Dalode, Jean Moreira, Mohamed Mansourou Soumanou, Paulin Azokpota and Moussa Sie. (2018); CARACTERISATION PHENOTYPIQUE ET GENETIQUE DU RIZ AFRICAIN (ORYZA GLABERRIMA STEUD) PHENOTYPIC AND GENETIC CHARACTERIZATION OF AFRICAN RICE (ORYZA GLABERRIMA STEUD). Int. J. of Adv. Res. 6 (Feb). 1389-1398] (ISSN 2320-5407). www.journalijar.com

Paulin AZOKPOTA
1. Laboratoire de Biologie Moléculaire et de Formulation Alimentaire ; Ecole de Nutrition, Sciences et Technologies Alimentaires, Faculté des Sciences Agronomiques, Université Abomey Calavi Benin

DOI:

Article DOI: 10.21474/IJAR01/6569      
DOI URL: https://dx.doi.org/10.21474/IJAR01/6569

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