3D STRUCTURE PREDICTION AND VISUALIZATION OF PROTEIN OF THE NOVEL STRAIN OF RHODOPSEUDOMONAS FAECALIS

The secondary protein structure of Rhodopseudomonas faecalis was obtained from the partial protein sequence, protein analysis and domain prediction were characterized further using PSIPRED tool. Motifs were analyzed using Motif Scan-Prosite pattern tool. The 3D Structure prediction and visualization was performed using Phyre2 program, Galaxy Web and CASTp platforms. The visualization of the predicted and concrete structure of the protein was done using RASMOL. The results shows that the protein structure has sites for amidation, phosphorylation and myristylation along with 30% alpha helix and 19% beta strands, 3₁₀ helix , Pi helix, turns and bends with repeated 11 different aminoacids occurrence.